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open-source software simplot  (Simplot Science)
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Simplot Science open-source software simplot
Open Source Software Simplot, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open-source software simplot version 3.5.1  (Simplot Science)
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Simplot Science open-source software simplot version 3.5.1
Open Source Software Simplot Version 3.5.1, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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open-source software simplot version 3.5.1 - by Bioz Stars, 2026-04
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open-source software  (Simplot Science)
90
Simplot Science open-source software
Open Source Software, supplied by Simplot Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dnase  (Illumina Inc)
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Illumina Inc dnase
KEY RESOURCES TABLE
Dnase, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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KEY RESOURCES TABLE

Journal: Cell

Article Title: Virome characterization of game animals in China reveals a spectrum of emerging pathogens

doi: 10.1016/j.cell.2022.02.014

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER TRIzol Thermofisher Cat. #15596026 TruSeqTM Stranded Total RNA Sample Preparation Kit Illumina Cat. #20020597 DNase I TAKAR Cat. #2270B Ribo-ZeroTM rRNA Removal Kits Illumina Cat. #20037135 Biological samples Samples are described in Table S1 This paper N/A Deposited data Raw sequencing reads after QC This paper NCBI-SRA BioProject: PRJNA793740 and PRJNA795267 Data for all viral genomes This paper NCBI-Genbank: OM132156-OM132190 Data for all phylogenetic tree This paper https://doi.org/10.6084/m9.figshare.18120236 Software and algorithms bbmap v38.62 https://sourceforge.net/projects/bbmap/ https://sourceforge.net/projects/bbmap/ MEGAHIT v1.2.8 Li et al., 2015 https://github.com/voutcn/megahit Diamond v0.9.25.26 Buchfink et al., 2021 https://github.com/bbuchfink/diamond SeqMan v7.0 Clewley, 1995 https://www.dnastar.com/software/ Geneious v2019.2.1 The Biomatters development team https://www.geneious.com/ Bowtie2 v2.3.5.1 Langmead and Salzberg, 2012 http://bowtiebio.sourceforge.net/bowtie2 TransDecoder v5.5.0 http://transdecoder.github.io http://transdecoder.github.io MAFFT v7.475 Katoh and Standley, 2013 https://mafft.cbrc.jp/alignment/software/ TrimAL v1.2rev59 Capella-Gutiérrez et al., 2009 https://github.com/scapella/trimal PhyML v3.1 Guindon and Gascuel, 2003 http://www.atgc-montpellier.fr/phyml/ Simplot v3.5.1 Lole et al., 1999 https://www.mybiosoftware.com/simplot-3-5-1-sequence-similarityplotting.html SplitsTree v4.15.1 Huson, 2006 https://software-ab.informatik.uni-tuebingen.de/download/splitstree4/welcome.html RDP4 v4.97 Martin et al., 2015 http://web.cbio.uct.ac.za/~darren/rdp.html IQ-Tree v2.0.3 Minh et al., 2020 http://www.iqtree.org/ Other Sequencing systems Illumina Novaseq 6000 NCBI GenBank database Sayers et al., 2021 https://www.ncbi.nlm.nih.gov/genbank/ RefSeq (viral genomes) Brister et al., 2015 https://www.ncbi.nlm.nih.gov/refseq/ SILVA database Quast et al., 2013 www.arb-silva.de Open in a separate window KEY RESOURCES TABLE METHOD DETAILS .

Techniques: Sample Prep, Sequencing, Software